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Publications
Trade journals, Journals for the
public
NEMO leaflets
NEMO Flyers for Exploitable Results
Publications
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Ask, M., Mapelli, V., Höck, H., Olsson, L.
Bettiga, M. 2013. Engineering glutathione biosynthesis of
Saccharomyces cerevisiae for increased robustness to inhibitors
in pretreated lignocellulosic materials. Microbial Cell
Factories 2013, 12:87, doi: 10.1186/1475-2859-12-87, 2013 Oct 1.
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Ask M, Bettiga M, Duraiswamy VR and Olsson
L. Pulsed addition of HMF and furfural to batch-grown xylose-utilizing
Saccharomyces cerevisiae results in different physiological
responses in glucose and xylose consumption phase Biotechnology
for Biofuels 2013, 6:181
doi:10.1186/1754-6834-6-181, 2013 Dec 16.
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Demeke MM, Dietz H, Li Y, Foulquié-Moreno
MR, Mutturi S, Deprez S, Den Abt T, Bonini BM, Liden G,
Dumortier F, Verplaetse A, Boles E, Thevelein JM. 2013.
Development of a D-xylose fermenting and inhibitor tolerant
industrial Saccharomyces cerevisiae strain with high performance
in lignocellulose hydrolysates using metabolic and evolutionary
engineering. Biotechnol Biofuels. 6(1):89, doi:
10.1186/1754-6834-6-89, 2013 Jun 21.
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Farwick A, Bruder S, Schadeweg V, Oreb M,
Boles E. 2014. Engineering of yeast hexose transporters to
transport D-xylose without inhibition by D-glucose. Proc Natl
Acad Sci U S A., 111(14) 5159-64, 2014 Apr 8. doi:
10.1073/pnas.1323464111. Epub 2014 Mar 24.
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Hubmann G, Mathé1 L, Foulquié-Moreno, MR,
Duitama J, Nevoigt E, and Thevelein JM. 2013.
Identification of multiple interacting alleles conferring
low glycerol and high ethanol yield in Saccharomyces cerevisiae
ethanolic fermentation. Biotechnology for Biofuels 2013, 6:87
doi:10.1186/1754-6834-6-87, 2013 Jun 11.
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Martani, F., Fossati, T., Posteri, R.,
Porro, D. and Branduardi, P. 2013. Different response to acetic
acid stress in Saccharomyces cerevisiae wild type and L-ascorbic
acid producing strains, Yeast. 30(9):365-78. doi:
10.1002/yea.2969, Epub 2013 Jul 30.
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Mutturi S and Liden G. 2013. Effect of
temperature on simultaneous saccharification and fermentation of
pretreated spruce and arundo. Ind. Eng. Chem. Res.
52, 1244−1251.
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Mutturi S and Lidén G. 2014. Model- based
estimation of optimal temperature profile during simultaneous
saccharification and fermentation of Arundo donax. Biotechnol.
Bioeng. 111, 866-875.
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Pais TM, Foulquié-Moreno MR, Hubmann G,
Duitama J, Swinnen S, Goovaerts A, Dumortier F, and Thevelein
JM. 2013. Comparative polygenic analysis of maximal ethanol
accumulation capacity and tolerance to high ethanol levels of
cell proliferation in yeast. PLOS, Genetics, doi:
10.1371/journal.pgen.1003548, June 06, 2013.
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Pais T, Foulquié-Moreno MR, and Thevelein
JM. 2014. QTL Mapping by Pooled-Segregant Whole Genome
Sequencing in Yeast. Vol. 1152. Yeast Metabolic Engineering:
Methods and Protocols , Methods in Molecular Biology,
Humana Press, Springer, USA. ISBN 978-1-4939-0562-1.316p.
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Signori L, Passolunghi S, Ruohonen L, Porro
D, Branduardi P. 2014. Effect of oxygenation and temperature on
glucose-xylose fermentation in Kluyveromyces marxianus CBS712
strain. Microbial Cell Factories 13(1):51, 2014,
Apr 8,
doi:
10.1186/1475-2859-13-51.
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Wallace-Salinas V, Gorwa-Grauslund MF.
2013. Adaptive evolution of an industrial strain of
Saccharomyces cerevisiae for combined tolerance to inhibitors
and temperature. Biotechnology for biofuels 6 (1): 151.
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Wallace-Salinas V, Signori, LLi
Y-Y,
Ask M, Bettiga M, Porro
D, Thevelein JM, Branduardi B, Foulquié-Moreno MR,
Gorwa-Grauslund MF. 2014. Re-assessment of YAP1 and MCR1
contributions to inhibitor tolerance in robust engineered
Saccharomyces cerevisiae fermenting undetoxified lignocellulosic
hydrolysate. AMB Express 4 (1), 56.
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Wallace-Salinas V, Signori L, Li YY, Ask M,
Bettiga M, Porro D, Thevelein JM, Branduardi P, Foulquié-Moreno
MR, Gorwa-Grauslund M. Re-assessment of YAP1 and MCR1
contributions to inhibitor tolerance in robust engineered
Saccharomyces cerevisiae fermenting undetoxified lignocellulosic
hydrolysate. 2014. AMB Express. 2014 Jul 22;4:56. doi:
10.1186/s13568-014-0056-5. eCollection 2014.
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Yang Y., Foulquié-Moreno M., Erdei E.,
Schaerlaekens K., Dumortier F. and Thevelein J.M. 2013. QTL
analysis of high thermotolerance with superior and downgraded
parental yeast strains reveals new minor QTLs and converges on
novel causative alleles involved in RNA processing. PLOS
Genetics, doi: 10.1371/journal.pgen.1003693, August 15, 2013.
In
Press
Submitted
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Ellilä S, Bromann P, Nyyssönen M, Itävaara
M, Marjamaa K, Koivula A, Paulin L, Kruus K. Isolation of novel
xylanases from lignocellulose-enriched compost metagenomic
libraries using functional screening and high-throughput
sequencing (submitted 11/2013)
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Moilanen U, Kellock M, Várnai A, Andberg M,
Viikari L. Mechanisms of laccase-mediator treatments improving
the enzymatic hydrolysis of pre-treated spruce
(submitted to
Biotechnology for Biofuels (10/2014).
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Rahikainen J, Moilanen U, Nurmi-Rantala S,
Lappas, A, Koivula A, Viikari L and Kruus K. Effect of
temperature and enzyme structure on unproductive cellulase
adsorption onto
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lignin (submitted).
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Soh KC,
Miskovic L and Hatzimanikatis V. Systematic characterization of
thermodynamic and metabolic flux spaces through Flux
Directionality Profile Analysis (submitted).
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Wiklund C, Mutturi S, Lidén G. Heat effects
on the anaerobic metabolism of Saccharomyces cerevisiae in
glucose-limited chemostat (submitted 02/2014).
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Voutilainen SP, Nurmi-Rantala S, and
Koivula A. 2013. Construction of thermostable cellulases with
high activity on crystalline cellulose (submitted).
Dissertations
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Wallace-Salinas V. 2014. Improving stress
tolerance in industrial Saccharomyces cerevisiae strains for
ethanol production from lignocellulosic biomass. PhD thesis,
Division of Applied Microbiology, Lund University, Sweden.
Congress
presentations
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EU-China Science and Technology Week,
World Expo, 14-19 June 2010, Shanghai, China
Merja Penttilä, VTT
Bioethanol for sustainable Transportation [PDF]
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14th International Biotechnology Symposium
and Exhibition, IBS 2010, September 14-18, 2010, Rimini, Italy
Merja Penttilä, VTT
Novel high
performance enzymes and micro-organisms for conversion of
lignocellulosic biomass to bioethanol [PDF]
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The 2nd Nordic Wood Biorefinery
Conference, NWBC-2009, 2 - 4 September 2009, Helsinki, Finland
Merja Penttilä, VTT
Novel high performance enzymes and micro-organisms for
conversion of lignocellulosic biomass to bioethanol (NEMO)
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International Workshop on Wood Biorefinery
and Tree Biotechnology, 21 - 23 June 2010, Örnsköldsvik, Sweden
Merja Penttilä, VTT
Enzymes for plant biomass hydrolysis
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Forum BioVision, The World Life Sciences
Forum, 28 March 2011, Lyon, France
Liisa Viikari, UH
Biotechnical conversion of biomass to biofuels
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33rd symposium on biotechnology for fuels
and chemicals, 4 May 2011, Seattle, USA
Ulla Moilanen, UH
The role of softwood and cane lignins in enzymatic hydrolysis
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EPNOE, 2nd International Polysaccharide
Conference, Polysaccharides as source of advanced and
sustainable products; 29 August 2011, Wageningen, The
Netherlands
Liisa Viikari, UH
Overcoming bottlenecks in lignocellulose conversion to platform
sugars
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ISSY28, 28th International Specialized
Symposium on Yeasts, 'Metabolic and bioprocess engineering for
sustainable development', Bangkok, Thailand
Johan Thevelein, VIB
Improved industrial yeast strains for bioethanol production:
high ethanol tolerance
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ISSY29, 29th International Specialized
Symposium on Yeasts, 'The relevance of yeast and microbial
consortia in traditional and industrial fermentations', 29
Aug.-2 Sept. 2011, Guadalajara, Mexico
Johan Thevelein, VIB
Polygenic analysis of tolerance to high ethanol levels in the
yeast Saccharomyces cerevisiae
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ACS Annual Meeting 16-20 August 2009,
Washington, D.C., USA
Vassily Hatzimanikatis, EPFL
Optimization of ethanol production from xylose in Saccharomyces
cerevisiae
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Metabolic Engineering VIII: Metabolic
Engineering for Green Growth, 13-17 June, 2010, Jeju, Korea
Vassily Hatzimanikatis, EPFL
Retrofitting Complex Systems for Green Growth
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AIChE Annual Meeting, 7-12 November, 2010,
Salt Lake City, USA
Ljubisa Miskovič, EPFL
Improving Ethanol Production of Xylose-Utilizing Saccharomyces
cerevisiae
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The XII International Congress on
Molecular Systems Biology, 8-12 May, 2011, Lleida, Spain
Vassily Hatzimanikatis, EPFL
Model building and analysis under uncertainty
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VIB-BGI Genomics meeting seminar in
Leuven, Belgium. February 15, 2012
Jean-Paul Mejnen, VIB
Polygenic analysis of stress tolerance as a complex trait in
Saccharomyces cerevisiae
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Microbial Stress: from molecules to
systems, 10-13 May 2012, Belgirate, Italy
Maurizio Bettiga, CTH
Robust yeast for feasible lignocellulose based production
Eckhard Boles, GUF
Bioethanol from Biomass, Simultaneous Fermentation of C6- and
C5-Sugars under Very Harsh Conditions
Vassily Hatzimanikatis, EPFL
What’s the cost of stress management? Some considerations from
flux balance and metabolic control analysis
Valeria Wallace, ULUND
Long-term adaptation of an industrial Saccharomyces cerevisiae
strain: combining lignocellulosic-derived inhibitors robustness
and thermotolerance
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8th International Conference on Renewable
Resources and Biorefineries, 4-6 June 2012,Toulouse, France
Sandra Hinz, DNL
The xylanase machinery of Myceliophthora thermophila C1
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Metabolic Engineering IX, 3-7 June 2012,
Biarritz, France
Vassily Hatzimanikatis, EPFL
Development and Analysis of Genome-Scale Kinetic Models
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Cobra Conference 2012, 7-9 October, 2012,
Copenhagen, Denmark
Vassily Hatzimanikatis, EPFL
From COBRA to genome-scale kinetic models of metabolism
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FOSBE 2012 Conference, 21-25 October,
2012, Tsuruoka, Japan
Ljubisa Miskovic, EPFL
Interplay Between Upper Glycolysis and Xylose Uptake Rate in
Recombinant Xylose-Utilizing S. cerevisiae
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Oxizymes, 16-19 September 2012, Marseille,
France
Johanna Rytioja, UH
The expression of selected cellulose acting enzymes of the
white-rot fungus Dichomitus squalens
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13th International Congress on Yeasts,
August 26-30, 2012 Madison, WI, USA
Magnus Ask, CTH
HMF and furfural stress results in drainage of redox and energy
charge of Saccharomyces cerevisiae
Maurizio Bettiga, CTH
Robust Microorganisms and Process Strategies– The Key to
Successful Lignocellulose Based Production
Mekonnen Demeke, VIB
Development of xylose utilizing and inhibitor tolerant
industrial yeast strain for second generation bio-ethanol
production
Thiago Pais, VIB
QTL mapping of maximal ethanol accumulation capacity and high
ethanol tolerance by pooled-segregant sequencing in a sake yeast
strain
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6-8 December 2012, Visoça, Brazil
Johan Thevelein, VIB
Polygenic analysis of complex traits for development of superior
industrial yeast strains
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3rd International Conference on
Lignocellulosic Ethanol, 3-5 April 2013, Madrid, Spain
Merja Penttilä, VTT
Novel high performance enzymes and micro-organisms for
conversion of lignocellulosic biomass to bioethanol
Gunnar Lidén, ULUND
Fermentation procedures – Some thoughts about mixing and
temperature
Johan Thevelein, VIB
Development of superior xylose-fermenting and robust industrial
yeast strains for lignocellulosic bioethanol production
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Biorefinery for Food, Fuel and Materials,
7-10 April 2013, Wageningen, The Netherlands
Sandra Hinz, DNL
Functional analysis of the Myceliophthora thermophila C1
xylanase machinery
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PYFF 5, 5th Conference on Physiology of
Yeast and Filamentous Fungi, June 4 - 7, 2013, Montpellier,
France
Eckhard Boles, GUF
Re-engineering of glucose transporters into xylose transporters
for improved co-fermentation of mixed-sugar hydrolysates with
Saccharomyces cerevisiae
Press
releases
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Cordis News
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European Life Science Portal/Press releases
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Bionity.com news, News Center, Current news
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Renewable Energy
Magazine
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Project and flyer presentation on NEMO at
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19th
European Biomass Conference and
Exhibition, 6-10 June, 2011, Berlin,
Germany (Rainer Janssen, WIP)
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Biocore Biorefinery Summer School,
29th August-1st September, 2011,
Paris, France
(Wolfgang Hiegl, WIP)
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World Biofuels Markets Congress & Exhibition, 13-15
March 2012, Rotterdam, Netherlands (Rainer Janssen,
WIP)
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20th European Biomass Conference and
Exhibition, 18-22 June 2012, Milan,
Italy (Rainer Janssen, WIP)
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3rd International Conference on Lignocellulosic Ethanol, on 3rd April 2013 in Madrid, Spain (Rainer Janssen, WIP)
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